Greenleaflab/archr

Author: orfm

August undefined, 2024

WebJan 16, 2024 · In the creation of pseudobulk replicates, it can happen in a sample-aware manner, which is great. However, it seems like in certain cases where minCells per … WebAug 13, 2024 · Hello, I am trying to export the peaks by cells accessibility matrix for external use, but when I use getMatrixFromProject the number of cells is much fewer than the …

addGeneIntegrationMatrix error · Issue #1057 · GreenleafLab/ArchR

WebJul 27, 2024 · Yes - ArchR works for ATAC and RNA data acquired from different cells (see the manual) as well as the newer multiome approaches. Our expectation is that you … WebSep 28, 2024 · I am using my dataset for ArchR analyses. These are scATAC seq dataset. I am able to run through the initial steps of creation of arrow files but it seems to be stuck at "Creating ArrowFile From Temporary File 9.113 mins elapsed" for over two hours. how do i reinstall norton antivirus

GitHub - GreenleafLab/ArchR: ArchR : Analysis of …

Web4 hours ago · I noticed that when I used the getMatrixFromProject function, there was a problem about HDF5. The following is the detailed related content: Attach your log file ArchR-getMatrixFromProject-1bfab75719cfea-Date-2024-04-14_Time-05-37-50.log... WebFeb 1, 2024 · If I leave out the pal option, the UMAP is plotted correctly in default colors. I have this issue with two different ArchR projects but I have not tried reproducing with the … WebJul 5, 2024 · Version. 1.0.2. Package repository. View on GitHub. Installation. Install the latest version of this package by entering the following in R: install.packages ("remotes") … how much money does pubg make

createArrowFiles has encountered an error, checking if any

copy ArchR outputs to another computer, how to change the …

Web5 hours ago · GreenleafLab / ArchR Public. Notifications Fork 96; Star 284. Code; Issues 18; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights ... , reducedDims = "IterativeLSI" ) ArchR logging to : ArchRLogs/ArchR-addPeak2GeneLinks-28e376a2da62-Date-2024-04-14_Time-16-57-19.log If there is an issue, please report to github with … WebJan 30, 2024 · ArchR has a built-in logging functionality for all complex functions. You MUST attach your log file (indicated in the console output) to this issue. Just drag and … how much money does publix makeWebMar 2, 2024 · Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. how do i reinstall my nvidia graphics driver

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Greenleaflab/archr

Error in getMatrixFromProject: "Error in H5Dread(h5dataset

WebGreenleafLab / ArchR Public Notifications Fork 93 274 Actions Projects Error in H5Fopen (file): Unable to open HDF5 file when using subsetArchRProject to create new arrow files JohnGenome opened this issue on Jul 16, 2024 · 26 comments JohnGenome commented on Jul 16, 2024 WebLove Archr. I went through the entire pipeline with my multiome paired scRNAseq and ATACseq data on 11 different samples. Now I have clusters and UMAPs generated via LSI-combined and harmony and I would like to run cellchat on them. But I have no idea how to extract the RNAseq seurat object from my Archr Project.

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Web5 hours ago · GreenleafLab / ArchR Public. Notifications Fork 96; Star 284. Code; Issues 18; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights ... , reducedDims … WebLove Archr. I went through the entire pipeline with my multiome paired scRNAseq and ATACseq data on 11 different samples. Now I have clusters and UMAPs generated via …

WebOct 11, 2024 · ArchR-createArrows-6dde1096a29b-Date-2024-10-11_Time-13-52-12.log Hello, I am trying to run through the tutorial data set and have run into an error where … WebJun 19, 2024 · Originally I thought there is something wrong with the dataset, but my PI's code works, and at the same time, the ArchR code works fine on the Tutorial dataset under current Conda environment. By the way, I used ArchR in Conda environment on HPC. The following is the sessionInfo(). Maybe, I should make a new ArchR only Conda …

WebOct 17, 2024 · GreenleafLab / ArchR Public Notifications Fork 95 Star 282 Code Issues 16 Pull requests 9 Discussions Actions Projects Security Insights New issue ArchR object … WebJun 14, 2024 · GreenleafLab / ArchR Public Notifications Fork 95 Star 282 Code Issues 15 Pull requests 9 Discussions Actions Projects Security Insights Peak call summary #821 Unanswered NoemieL asked this question in Questions / Documentation edited by rcorces NoemieL on Jun 14, 2024 Hello,

WebJul 4, 2024 · ArchR is currently in Beta and will be in active development through the peer review process. ArchR is a full-featured R package for processing and analyzing single … Secure platform, secure data We’re constantly improving our security, audit, … Actions - GitHub - GreenleafLab/ArchR: ArchR : Analysis of Regulatory … We would like to show you a description here but the site won’t allow us. Pull requests 7 - GitHub - GreenleafLab/ArchR: ArchR : Analysis … Explore the GitHub Discussions forum for GreenleafLab ArchR. Discuss code, ask … GitHub is where people build software. More than 83 million people use GitHub … We would like to show you a description here but the site won’t allow us.

WebOct 5, 2024 · ArchR logging to : ArchRLogs/ArchR-getMarkerFeatures-ea792557637e-Date-2024-09-15_Time-19-21-01.log If there is an issue, please report to github with logFile! 2024-09-15 19:21:02 : Matching … how do i reinstall office 2019WebHello, I copy the ArchR output to another computer, while plotEmbedding function does not work due to the working directory sorted in ArchR object. how much money does race v2 costWebI'm continuously try to set-up and understand the data analysis workflow using ArchR. During following "full tutorial", I got question. After calculating gene scores, how can I … how much money does qatar have in totalWebOptions include "Macs2" for using macs2 callpeak or "Tiles" for using a TileMatrix. #' @param reproducibility A string that indicates how peak reproducibility should be … how much money does pubg mobile makeWebJun 6, 2024 · GreenleafLab / ArchR Public. Notifications Fork 95; Star 282. Code; Issues 15; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights; Getting … how do i reinstall office 2013WebMay 25, 2024 · GreenleafLab / ArchR Public Notifications Fork 93 Star 276 Code Issues 15 Pull requests 9 Discussions Actions Projects Security Insights New issue addGeneIntegrationMatrix error #174 Closed Brawni opened this issue on May 25, 2024 · 8 comments Brawni commented on May 25, 2024 • edited how do i reinstall office 2021WebHello, I copy the ArchR output to another computer, while plotEmbedding function does not work due to the working directory sorted in ArchR object. how do i reinstall office 365 home